VAT Return Checklist Template (Making Tax Digital)

The VAT return is due whether or not the books are ready, and most of what goes wrong with it happened weeks earlier: a total retyped between spreadsheets, a reverse charge nobody posted, an import VAT statement nobody downloaded.

This checklist is written for UK VAT. Under Making Tax Digital, every VAT-registered business in the UK keeps its VAT records digitally and files through compatible software, so the filing takes a few clicks. The software can’t tell you whether the records are complete, whether an unusual purchase carries reclaimable VAT, or whether last quarter’s mistake can go on this return. This free VAT return checklist gives finance managers, bookkeepers and accountants a repeatable process for every VAT period, from the scope questions and digital records through imports, reverse charges and the control account reconciliation to an independent review, submission and payment. Phases for partial exemption and error correction appear only when they apply. Other VAT systems and US sales tax are not covered.

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Last reviewed: September 2026

What Making Tax Digital Handles, and What It Leaves to You

Making Tax Digital for VAT has applied to every VAT-registered business since April 2022, including businesses that registered voluntarily below the £90,000 registration threshold. It has two requirements. The VAT records, including the tax point, value and rate of each supply made or received, must be kept in functional compatible software. And where more than one program is involved, data must move between them through a digital link, such as a linked cell, a CSV import or an API. HMRC does not accept copying and pasting or retyping figures as a digital link.

Compliant software is not the same as a correct return: it files whatever the records say. Coding, completeness and judgement still belong to people, and that is what this checklist covers.

Your MTD software

Handles the mechanics

  • Holds the digital records and the VAT account
  • Calculates the nine boxes from the transactions coded to them
  • Submits the return to HMRC through its API
  • Shows obligations, deadlines and receipts
This checklist

Handles the judgement

  • Records complete, coded correctly and digitally linked
  • Imports, reverse charges and Northern Ireland movements accounted for
  • Control account reconciled and movements explained
  • Errors corrected the right way; return reviewed before it is filed

What the VAT Return Checklist Covers

Seven phases take each VAT period from records to payment. Phase 5 appears only for partly exempt businesses and Phase 6 only when errors on earlier returns need correcting.

Set-Up

Phase 1: Confirm the Period & Scope

The scope questions decide which tasks and phases appear, so answer them before anyone starts on the records.

  • Confirm the period dates, filing deadline and payment date — from your software or HMRC online account; usually one calendar month and 7 days after the period ends
  • Choose the preparer and the reviewer — the reviewer must be someone other than the preparer
  • Check the MTD software is still connected to HMRC — re-authorise it now if the connection has lapsed, not on deadline day
  • Answer the special transaction questions — imports under postponed VAT accounting, reverse-charge supplies, and goods moved between Northern Ireland and the EU
  • Confirm whether the business is partly exempt — it makes exempt supplies, such as some property, finance or insurance income
  • Record any errors found on earlier returns — with the period, the amount and how they were found
Records

Phase 2: Complete the Digital Records

  • Post every sales invoice and credit note in the period of its tax point — check the sales ledger against the billing system and the invoice numbering sequence
  • Post every purchase invoice and check the VAT is reclaimable — a valid VAT invoice, a business purpose, and no blocked items such as business entertainment
  • Record card, cash and expense claim transactions — with a VAT receipt for every reclaim
  • Check every link between programs is digital — no retyped or pasted figures between spreadsheets, bridging software and the ledger
  • Reconcile the bank accounts to the period end — so no transaction is missing from the VAT records
  • Review the VAT codes on unusual transactions — zero-rated, exempt, outside the scope, and mixed supplies
Special Items

Phase 3: Imports, Reverse Charges & Special Items

The first three tasks appear only when the matching Phase 1 question is answered Yes.

  • Download the postponed import VAT statement and agree it to your import records — include the VAT in boxes 1 and 4 and the import value in box 7; estimate if a statement is missing
  • Account for reverse-charge purchases — construction services and services from overseas suppliers; output VAT in box 1 and input VAT in box 4
  • Report goods moved between Northern Ireland and the EU — boxes 2, 8 and 9, and an EC Sales List for sales to EU VAT-registered customers
  • Review customer debts for bad debt relief — unpaid for at least six months after the later of the due date and the supply, and written off
  • Repay input tax on supplier invoices unpaid after six months — as a reduction in box 4
Reconcile

Phase 4: Reconcile & Prepare the Return

  • Reconcile the VAT control account to the draft return — explain any difference before going further
  • Agree boxes 6 and 7 to the sales and purchase ledgers — net values, excluding VAT
  • Compare the return with the last period and the same period last year — and explain every significant movement
  • Check the largest input tax claims individually — capital purchases, property costs and anything outside the normal run of costs
  • Attach the draft return and supporting reports — the VAT report, the reconciliation and the working papers
If Partly Exempt

Phase 5: Partial Exemption

Shown only for businesses that make exempt supplies as well as taxable ones.

  • Attribute input tax to taxable supplies, exempt supplies or both — the residual share is the part used for both
  • Calculate recoverable residual input tax — using the standard method or your HMRC-approved special method
  • Run the de minimis test — exempt input tax no more than £625 a month on average and no more than half of all input tax
  • Diarise the annual adjustment — due in the first return after the partial exemption year ends, or brought forward to the last return of that year
If Needed

Phase 6: Correct Errors on Earlier Returns

Shown only when errors on earlier returns were recorded in Phase 1.

  • Work out the net value of the errors — across all the earlier periods affected, and note whether any were deliberate
  • Check the error correction threshold — £10,000, or 1% of box 6 up to £50,000
  • Correct errors within the threshold on this return — record the adjustment in the VAT account with a note of the periods affected
  • Report larger or deliberate errors to HMRC separately — online or in writing; they cannot go on this return
  • Confirm each error is within the four-year time limit — counted from the end of the period in which it was made
Submit & Pay

Phase 7: Review, Submit & Pay

  • Review and approve the return — the reviewer checks the reconciliation and working papers, then answers Approved or Not approved
  • Submit the return through MTD-compatible software — before the deadline, and attach the submission receipt
  • Pay the VAT due, or confirm the Direct Debit — the money must reach HMRC by the deadline; Direct Debits are collected 3 working days after it
  • Post the VAT payment and clear the control account — the balance after payment should be nil or explained
  • Check the HMRC account for penalty points, interest or letters — and assign an owner to anything that needs a response
  • Archive the VAT file for the period — VAT records must be kept for at least 6 years

UK VAT Deadlines, Thresholds and Penalties at a Glance

The rules the checklist relies on most, stated as rules rather than calendar dates. HMRC changes thresholds and rates from time to time, so check GOV.UK before relying on a figure; your own deadlines appear in your MTD software and HMRC online account.

Rule What it says
Return and payment deadlineUsually one calendar month and 7 days after the end of the VAT period, and payment must have reached HMRC by then. A Direct Debit set up at least 3 working days before you submit is collected 3 working days after the deadline.
Payments on accountQuarterly filers with more than £2.3 million of VAT a year pay interim amounts on the last working day of months two and three of each quarter, and the balance by the last working day of the following month, with no 7-day extension.
Registration thresholdTaxable turnover of more than £90,000 in a rolling 12 months (since 1 April 2024). Cancellation is optional below £88,000.
Correcting earlier errorsCorrect them on the next return if the net value is £10,000 or less, or up to £50,000 and no more than 1% of box 6. Otherwise, or if deliberate, report them separately. Four-year time limit.
Late returnsOne penalty point per late return, including nil and repayment returns. A £200 penalty at the threshold (2 points for annual, 4 for quarterly, 5 for monthly filers) and for each late return after it.
Late paymentNothing if paid within 15 days. 3% of the amount unpaid at day 15, plus 3% of the amount unpaid at day 30, then a daily penalty at 10% a year from day 31.
Late payment interestBank of England base rate plus 4%, charged from the day after the deadline until the VAT is paid.
Postponed import VAT statementsUsually available by the 10th working day of the month and online for 6 months, so download each one.
Bad debt reliefClaim once the debt is 6 months overdue and written off, within 4 years and 6 months.
EC Sales ListNorthern Ireland businesses selling goods to VAT-registered EU customers only, within 21 days of the end of the reporting period. Businesses in Great Britain no longer file one.

Form VAT652 has gone. HMRC withdrew it in September 2025. Errors above the threshold, and all deliberate errors, are now reported online or in writing, so update any older procedure that still mentions the form.

E-invoicing is coming. The government has announced that all business-to-business and business-to-government VAT invoices must be e-invoices from April 2029, using the Peppol network, with a roadmap due at Budget 2026. Add a Phase 1 task to track it once the detail is out.

Why Run the VAT Return in CheckFlow?

1

Every VAT period starts itself

A quarterly or monthly schedule creates the checklist the day after the period ends, with every task assigned and due dates set to land well inside the filing deadline. A stalled return shows as overdue well before the deadline.

2

Only the tasks this period needs

Answer the Phase 1 questions and the checklist adjusts. Import VAT, reverse charge and Northern Ireland tasks appear only when they apply, and the partial exemption and error correction phases stay hidden in a normal quarter.

3

A reviewer signs before anything is filed

The return cannot move to submission until the reviewer answers Approved. The reconciliation and submission receipt are attached to their tasks, and every step records who did it and when.

Good VAT returns start with clean books. The Monthly Bookkeeping Checklist keeps the ledger up to date between returns, and the Bank Reconciliation Checklist makes sure nothing is missing from the records Phase 2 relies on.

Output VAT starts with the sales invoice. The Monthly Invoicing & Billing Run Checklist checks the VAT on each invoice before it is sent, and the Accounts Receivable & Collections Checklist produces the write-off history a bad debt relief claim needs.

Frequently Asked Questions

What should a VAT return checklist include?

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The period’s deadlines and scope, completing and checking the digital records, special items such as import VAT, reverse charges and bad debt relief, a reconciliation of the VAT control account to the return, and an independent review before it is submitted and paid. Add partial exemption and error correction steps when they apply.

When is a UK VAT return due?

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Usually one calendar month and 7 days after the end of the VAT period, and the payment is due by the same date. Businesses making payments on account pay the balance by the last working day of the month after the period ends, without the 7-day extension, and the annual accounting scheme has its own deadlines. Your MTD software and HMRC online account show the exact dates.

Do I need Making Tax Digital software if I’m below the VAT threshold?

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Yes, if you are registered for VAT. Since April 2022 Making Tax Digital has applied to every VAT-registered business, including those that registered voluntarily. HMRC can grant an exemption where it is not reasonably practicable to use digital tools, for example because of a disability, a remote location without reasonable internet access, or religious belief. Age alone does not qualify, and you have to apply for the exemption.

How do I correct a mistake on a previous VAT return?

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If the net value of the errors is £10,000 or less, or up to £50,000 and no more than 1% of the box 6 figure on the current return, you can correct it on your next return. Larger errors, and any deliberate error, must be reported to HMRC separately, online or in writing. Form VAT652 was withdrawn in September 2025. Corrections are limited to four years from the end of the period in which the error was made.

What happens if a VAT return is filed or paid late?

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A late return earns a penalty point, and once you reach the threshold for your filing frequency each late return costs £200. Late payment penalties start if VAT is still unpaid 15 days after the deadline and grow after 30 days, and late payment interest runs from the day after the deadline at the Bank of England base rate plus 4%. Asking HMRC for a Time to Pay arrangement early can prevent late payment penalties.

Is CheckFlow free for this template?

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14-day free trial, no card required. The Business plan is $10 per user per month after the trial. Full details at checkflow.io/pricing.

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